Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| SKCM | rs10409906 | chr19:48681678 | G/A | 6.73E-5 | 101 | 15.38 | 14.8 | 11.73 | KM Plot |
| SKCM | rs10411910 | chr19:48677994 | C/T | 6.73E-5 | 101 | 15.38 | 14.8 | 11.73 | KM Plot |
| SKCM | rs10426345 | chr19:48679876 | C/T | 8.69E-5 | 99 | 15.63 | 14.7 | 11.73 | KM Plot |
| SKCM | rs10487502 | chr7:127600378 | A/G | 4.04E-5 | 101 | 10.87 | 16.83 | 14.7 | KM Plot |
| SKCM | rs10497555 | chr2:180864967 | A/G | 3.03E-5 | 100 | 15.13 | 14.23 | 9 | KM Plot |
| SKCM | rs10501396 | chr11:64885445 | C/A | 2.26E-5 | 96 | 15.57 | 13.5 | 8.9 | KM Plot |
| SKCM | rs10506458 | chr12:63445092 | G/A | 1.82E-7 | 101 | 15.3 | 14.3 | 8.8 | KM Plot |
| SKCM | rs10570870 | chr11:64546856 | TACAC/T | 6.62E-7 | 100 | 14.73 | 15.73 | 8.8 | KM Plot |
| SKCM | rs10679168 | chr5:148491462 | A/AAAAG | 2.24E-5 | 99 | 13.1 | 15.32 | 14.85 | KM Plot |
| SKCM | rs10715734 | chr2:180822569 | GA/G | 4.0E-5 | 98 | 9 | 13.72 | 14.9 | KM Plot |
| SKCM | rs10778418 | chr12:106052095 | C/T | 0 | 97 | 14.9 | 12 | 6.33 | KM Plot |
| SKCM | rs10793574 | chr10:45479809 | G/A | 1.97E-6 | 99 | 15.52 | 14.32 | 8.8 | KM Plot |
| SKCM | rs10797405 | chr1:3535678 | A/G | 4.08E-8 | 97 | 16.33 | 14.9 | 8.8 | KM Plot |
| SKCM | rs10885260 | chr10:113517442 | G/T | 4.28E-5 | 101 | 11.73 | 13.73 | 15.47 | KM Plot |
| SKCM | rs11084406 | chr19:56156447 | A/G | 2.25E-6 | 101 | 14.05 | 20.77 | 9 | KM Plot |